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Publications

* Combining Mining Results from Multiple Sources in Clinical Trials and Microarray Applications, Fatih Altiparmak, Ozgur Ozturk, Selnur Erdal, Hakan Ferhatosmanoglu, and Donald C. Trost, KDD 2007 Workshop on Mining Multiple Information Sources, August 12-15, 2007, San Jose, CA USA

* LFM-Pro: A Tool for Detecting Significant Local Structural Sites in Proteins, Ahmet Sacan, O. Ozturk, H. Ferhatosmanoglu and Yusu Wang, Bioinformatics.

* Information Mining over Heterogeneous Microarray and Clinical Data, F. Altiparmak, O. Ozturk, S. Erdal, H. Ferhatosmanoglu and D. C. Trost, CSB 2006

* Vector Space Indexing for Biosequence Similarity Searches. 0. Ozturk and H. Ferhatosmanoglu. (IJAIT), International Journal on Artificial Intelligence Tools, 2005, volume 14, pages 811-826

* A Novel Approach to Time Series Analysis of Microarray Data. Selnur Erdal, Ozgur Ozturk, Dave Armbruster, Hakan Ferhatosmanoglu, William C. Ray. in Proc. of The Fourth IEEE International Symp. on Bioinformatics and Bioengineering (BIBE'04),pages 366-378 (PDF copy)

* CoMRI: A Compressed Multi-Resolution Index Structure for Sequence Similarity Queries. H. Sun, O. Ozturk and H. Ferhatosmanoglu. in Proc. of IEEE Computer Society Bioinformatics Conference (CSB'03). Stanford, CA. August 2003. (Tech. Rep., PDF copy)

* Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases. O. Ozturk and H. Ferhatosmanoglu. in Proc. of The Third IEEE International Symp. on Bioinformatics and Bioengineering (BIBE'03), pp. 359-366. Washington, DC. March 2003. (Tech. Rep., presentation)

---bibtex format representations for your LaTEX documents---

@ARTICLE{Altiparmak_KDD2007,
AUTHOR = "Fatih Altiparmak, Ozgur Ozturk, Selnur Erdal, Hakan Ferhatosmanoglu, and Donald C. Trost",
TITLE = "Combining Mining Results from Multiple Sources in Clinical Trials and Microarray Applications",
PROCEEDINGS = "KDD Workshop on Mining Multiple Information Sources"
ADDRESS=San Jose, CA, USA
YEAR = "2007"
}

@ARTICLE{sacan2006,
AUTHOR = "Ahmet Sacan, O. Ozturk, H. Ferhatosmanoglu and Yusu Wang",
TITLE = "LFM-Pro: A Tool for Detecting Significant Local Structural Sites in Proteins",
JOURNAL = "Bioinformatics",
VOLUME = "",
NUMBER = "",
PAGES = "",
YEAR = "2007"
}

@ARTICLE{Altiparmak2006,
AUTHOR = "F. Altiparmak, O. Ozturk, S. Erdal, H. Ferhatosmanoglu and D. C. Trost",
TITLE = "Information Mining over Heterogeneous Microarray and Clinical Data",
JOURNAL = "Proc. of CSB 2006",
PAGES = "",
YEAR = "2006"
}

 

@ARTICLE{ozturk2005,
AUTHOR = "0. Ozturk and H. Ferhatosmanoglu",
TITLE = "Vector Space Indexing for Biosequence Similarity Searches",
JOURNAL = "IJAIT, International Journal on Artificial Intelligence Tools",
VOLUME = "14",
NUMBER = "5",
PAGES = "811-826",
YEAR = "2005"
}

@ARTICLE{erdal2004,
AUTHOR = "Selnur Erdal, Ozgur Ozturk, Dave Armbruster, Hakan Ferhatosmanoglu, William C. Ray",
TITLE = "A Novel Approach to Time Series Analysis of Microarray Data",
JOURNAL = "Proc. of The Fourth IEEE International Symp. on Bioinformatics and Bioengineering (BIBE'04)",
PAGES = "366-378"
}

@ARTICLE{sun2003,
AUTHOR = "Hong Sun and Ozgur Ozturk and Hakan Ferhatosmanoglu",
TITLE = "CoMRI: A Compressed Multi-Resolution Index Structure for Sequence Similarity Queries",
PROCEEDINGS = "Proc. Computational Systems Bioinformatics (CSB’03)",
VOLUME = "",
PAGES = "553-558",
YEAR = "2003"
}

@ARTICLE{ozturk2003,
AUTHOR = "0. Ozturk and H. Ferhatosmanoglu",
TITLE = "Effective indexing and filtering for similarity search in large biosequence datasbases",
PROCEEDINGS = "In Third IEEE Symposium on Biolnfonnatics and BioEngineering (BIBE)",
PAGES = "359-366",
YEAR = "2003"
}


 

 

 

 

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